Table 3 Genome statistics
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 4,609,043 | 100 |
DNA coding (bp) | 4,001,559 | 86.82 |
DNA G + C (bp) | 2,005,619 | 43.51 |
DNA scaffolds | 105 | 100 |
Total genes | 4,132 | 100 |
Protein coding genes | 4,008 | 97.00 |
RNA genes | 124 | 3.00 |
Pseudo genes | 867 | 20.98 |
Genes in internal clusters | 1,252 | 30.30 |
Genes with function prediction | 3,141 | 76.02 |
Genes assigned to COGs | 2,633 | 63.72 |
Genes with Pfam domains | 3,303 | 79.94 |
Genes with signal peptides | 186 | 4.50 |
Genes with transmembrane helices | 984 | 23.81 |
CRISPR repeats | 0 | 0 |