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Table 3 Number of genes associated with general COG functional categories

From: Genomic analysis of four strains of Corynebacterium pseudotuberculosis bv. Equi isolated from horses showing distinct signs of infection

Code

MB11

MB14

MB30

MB66

Description

Value

%age

Value

%age

Value

%age

Value

%age

J

127

5.83

148

6.62

123

5.64

122

5.54

Translation, ribosomal structure, and biogenesis

A

1

0.05

1

0.04

1

0.05

1

0.05

RNA processing and modification

K

55

2.52

90

4.03

55

2.52

54

2.45

Transcription

L

63

2.89

96

4.29

67

3.07

66

3.00

Replication, recombination, and repair

B

0

0

0

0

0

0

0

0

Chromatin structure and dynamics

D

16

0.73

25

1.12

16

0.73

16

0.73

Cell cycle control, cell division, and chromosome partitioning

V

13

0.60

23

1.03

13

0.60

13

0.59

Defense mechanisms

T

17

0.78

55

2.46

17

0.78

16

0.73

Signal transduction mechanisms

M

55

2.52

82

3.67

55

2.52

54

2.45

Cell wall/membrane biogenesis

N

1

0.05

14

0.63

1

0.05

1

0.05

Cell motility

U

17

0.78

21

0.94

17

0.78

17

0.77

Intracellular trafficking and secretion

O

53

2.43

79

3.53

55

2.52

53

2.41

Posttranslational modification, protein turnover, and chaperones

C

73

3.35

121

5.41

74

3.40

73

3.32

Energy production and conversion

G

73

3.35

100

4.47

74

3.40

72

3.27

Carbohydrate transport and metabolism

E

122

5.60

180

8.05

122

5.60

122

5.54

Amino acid transport and metabolism

F

58

2.66

74

3.31

57

2.62

57

2.59

Nucleotide transport and metabolism

H

83

3.81

113

5.05

83

3.81

83

3.77

Coenzyme transport and metabolism

I

36

1.65

51

2.28

36

1.65

35

1.59

Lipid transport and metabolism

P

68

3.12

118

5.28

67

3.07

67

3.04

Inorganic ion transport and metabolism

Q

13

0.60

28

1.25

13

0.60

12

0.55

Secondary metabolite biosynthesis, transport, and catabolism

R

113

5.19

275

12.30

111

5.09

110

5.00

General function prediction only

S

112

5.14

153

6.84

112

5.14

113

5.13

Function unknown

-

1010

46.35

389

17.40

1056

46.35

1044

47.43

Not in COGs

  1. The total is based on the total number of protein coding genes in the genome