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Table 2 Project information

From: Potential probiotic-associated traits revealed from completed high quality genome sequence of Lactobacillus fermentum 3872

MIGS ID

Property

Term

MIGS 31

Finishing quality

Completed high quality

MIGS-28

Libraries used

IonTorrent OT2 400 sequencing kit, PacBio P6/C4

MIGS 29

Sequencing platforms

Ion Torrent Personal Genome Machine, PacBio RSII sequencing Machine

MIGS 31.2

Fold coverage

19.7 (PacBio), 49.6 (Ion Torrent run1), 60.1 (Ion Torrent run 2), 47.9 (Ion Torrent run 3)

MIGS 30

Assemblers

CELERA, MIRA

MIGS 32

Gene calling method

NCBI PGAP, PROKKA, RAST, BASys

 

Locus Tag

NZ_CP011536

 

Genbank ID

CP011536.1

 

GenBank Date of Release

28/5/2015

 

GOLD ID

Ga0099330

 

BIOPROJECT

PRJNA224116, PRJNA213970

MIGS 13

Source Material Identifier

VKM:B-2793D

 

Project relevance

biotechnological, antimicrobial, probiotic