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Fig. 2 | Standards in Genomic Sciences

Fig. 2

From: Potential probiotic-associated traits revealed from completed high quality genome sequence of Lactobacillus fermentum 3872

Fig. 2

Phylogenetic tree based on comparative analysis of 16S rRNA genes. The sequences were aligned using the MUSCLE alignment tool [47]. The numbers above the tree nodes represent Bayesian posterior percentage probabilities computed using MrBayes 3.2.2 [48]. The tool used the HKY85 substitution model. A Markov Chain Monte Carlo chain length of 1,100,000 of a burn in length of 100,000, heated chains of 4 and a heated chain temperature of 0.2. Lactobacillus_reuteri_DSM_20016_NZ_AZDD00000000.1 was used as an out-group. The tree generated was further modified using Geneious tree builder [15]

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