Fig. 2From: Potential probiotic-associated traits revealed from completed high quality genome sequence of Lactobacillus fermentum 3872Phylogenetic tree based on comparative analysis of 16S rRNA genes. The sequences were aligned using the MUSCLE alignment tool [47]. The numbers above the tree nodes represent Bayesian posterior percentage probabilities computed using MrBayes 3.2.2 [48]. The tool used the HKY85 substitution model. A Markov Chain Monte Carlo chain length of 1,100,000 of a burn in length of 100,000, heated chains of 4 and a heated chain temperature of 0.2. Lactobacillus_reuteri_DSM_20016_NZ_AZDD00000000.1 was used as an out-group. The tree generated was further modified using Geneious tree builder [15]Back to article page