Towards long-read metagenomics: complete assembly of three novel genomes from bacteria dependent on a diazotrophic cyanobacterium in a freshwater lake co-culture

Table 6 Properties and statistics for each genome

Attribute	Hyphomonadaceae UKL13-1		Betaproteobacterium UKL13-2		Bacteroidetes UKL13-3
	Value	% of total	Value	% of total	Value	% of total
Genome size (bp)	3,501,508	100	3,387,087	100	3,236,529	100
DNA coding (bp)	3,166,294	90.43	3,017,556	89.09	2,922,707	90.3
DNA G + C (bp)	1,964,937	56.12	1,862,116	54.98	1,208,228	37.33
DNA scaffolds	1		1		1
Total genes	3255	100	3087	100	2850	100
Protein coding genes	2934	90.14	2772	89.8	2598	91.16
RNA genes	44	1.35	50	1.62	41	1.44
Pseudo genes	277	8.51	265	8.58	211	7.4
Genes in internal clusters	-	-	-	-	-	-
Genes with function prediction	2459	75.55	2300	74.51	1872	65.68
Genes assigned to COGs	2156	66.24	2078	67.31	1696	59.51
Genes with Pfam domains	2697	82.86	2489	80.63	2066	72.49
Genes with signal peptides	382	11.74	235	7.61	301	10.56
Genes with transmembrane helices (≥3)	310	9.52	271	8.78	255	8.95
CRISPR repeats	0		2		1

ISSN: 2524-6372