Draft genome sequences of eight bacteria isolated from the indoor environment: Staphylococcus capitis strain H36, S. capitis strain H65, S. cohnii strain H62, S. hominis strain H69, Microbacterium sp. strain H83, Mycobacterium iranicum strain H39, Plantibacter sp. strain H53, and Pseudomonas oryzihabitans strain H72

Lymperopoulou, Despoina S.; Coil, David A.; Schichnes, Denise; Lindow, Steven E.; Jospin, Guillaume; Eisen, Jonathan A.; Adams, Rachel I.

doi:10.1186/s40793-017-0223-9

Environmental Microbiome

Table 1 Classification and general features of the eight isolates in accordance with the MIGS recommendations [60]

From: Draft genome sequences of eight bacteria isolated from the indoor environment: Staphylococcus capitis strain H36, S. capitis strain H65, S. cohnii strain H62, S. hominis strain H69, Microbacterium sp. strain H83, Mycobacterium iranicum strain H39, Plantibacter sp. strain H53, and Pseudomonas oryzihabitans strain H72

MIGS ID	Property	Microbacterium sp. H83	Evidence code^a	Mycobacterium iranicum H39	Evidence code	Plantibacter sp. H53	Evidence code	Pseudomonas oryzihabitans H72	Evidence code	Staphylococcus capitis H36	Evidence code	S. capitis H65	Evidence code	S.cohnii H62	Evidence code	S. hominis H69	Evidence code
	Classification
	Domain	Bacteria	TAS [61]	Bacteria	TAS [61]	Bacteria	TAS [61]	Bacteria	TAS [61]	Bacteria	TAS [61]	Bacteria	TAS [61]	Bacteria	TAS [61]	Bacteria	TAS [61]
	Phylum	Actinobacteria	TAS [62]	Actinobacteria	TAS [62]	Actinobacteria	TAS [62]	Proteobacteria	TAS [63]	Firmicutes	TAS [64]	Firmicutes	TAS [64]	Firmicutes	TAS [64]	Firmicutes	TAS [64]
	Class	Actinobacteria	TAS [65]	Actinobacteria	TAS [65]	Actinobacteria	TAS [65]	Gammaproteobacteria	TAS [66, 67]	Bacilli	TAS [68, 69]	Bacilli	TAS [68, 69]	Bacilli	TAS [68, 69]	Bacilli	TAS [68, 69]
	Order	Micrococcales	TAS [70, 71]	Corynebacteriales	TAS [72, 73]	Micrococcales	TAS [70, 71]	Pseudomonadales	TAS [71, 74]	Bacillales	TAS [70, 71]	Bacillales	TAS [70, 71]	Bacillales	TAS [70, 71]	Bacillales	TAS [70, 71]
	Family	Microbacteriaceae	TAS [75, 76]	Mycobacteriaceae	TAS [71, 77]	Microbacteriaceae	TAS [75, 76]	Pseudomonadaceae	TAS [71, 78]	Staphylococcaceae	TAS [79]	Staphylococcaceae	TAS [79]	Staphylococcaceae	TAS [79]	Staphylococcaceae	TAS [79]
	Genus	Microbacterium	TAS [71, 80]	Mycobacterium	TAS [71, 81]	Plantibacter	TAS [15]	Pseudomonas	TAS [71, 82]	Staphylococcus	TAS [71, 83]	Staphylococcus	TAS [71, 83]	Staphylococcus	TAS [71, 83]	Staphylococcus	TAS [71, 83]
	Species	Microbacterium sp.	NAS	M. iranicum	TAS [11]	Plantibacter sp.	NAS	P. oryzihabitans	TAS [84]	S. capitis	TAS [71, 85]	S. capitis	TAS [71, 85]	S. cohnii	TAS [71, 86]	S. hominis	TAS [71, 85]
	Strain	H83	IDA	H39	IDA	H53	IDA	H72	IDA	H36	IDA	H65	IDA	H62	IDA	H69	IDA
	Gram stain	Positive	TAS [23]	Positive	TAS [11]	Positive	TAS [87]	Negative	TAS [30]	Positive	TAS [88]	Positive	TAS [88]	Positive	TAS [88]	Positive	TAS [88]
	Cell shape	Rod	TAS [23]	Rod	TAS [11]	Rod	TAS [87]	Rod	TAS [30]	Coccus/grape-like clusters	TAS [88]	Coccus/grape-like clusters	TAS [88]	Coccus/grape-like clusters	TAS [88]]	Coccus/grape-like clusters	TAS [88]
	Motility	nd		Non-motile	TAS [11]	Non-motile	TAS [87]	Motile	TAS [30]	Non-motile	TAS [88]	Non-motile	TAS [88]	Non-motile	TAS [88]	Non-motile	TAS [88]
	Sporulation	Non-spore forming	TAS [23]	Non-spore forming	TAS [11]	Non-spore forming	TAS [87]	Non-spore forming	NAS	Non-spore forming	TAS [88]	Non-spore forming	TAS [88]	Non-spore forming	TAS [88]]	Non-spore forming	TAS [88]
	Temperature range	Mesophile	TAS [23]	25-40°	TAS [11]	Mesophile	IDA	Mesophile	TAS [30]	18-45 °C	TAS [88]	18-45 °C	TAS [88]	15-45 °C	TAS [88]	20-45 °C	TAS [88]
	Optimum temperature	nd		37°	TAS [11]	30 °C	TAS [87]	nd		nd	IDA	nd		nd		30-40 °C	TAS [88]
	pH range; Optimum	5-11; nd	TAS [23]	nd		nd		nd		nd		nd		nd		nd
	Carbon source	Yeast extract, Peptone, Dextrose, Starch, Casamino acids	IDA	Yeast extract, Peptone, Dextrose, Starch, Casamino acids	IDA	Yeast extract, Peptone, Dextrose, Starch, Casamino acids	IDA	Yeast extract, Peptone, Dextrose, Starch, Casamino acids	IDA	Yeast extract, Peptone, Dextrose, Starch, Casamino acids	IDA	Yeast extract, Peptone, Dextrose, Starch, Casamino acids	IDA	Yeast extract, Peptone, Dextrose, Starch, Casamino acids	IDA	Yeast extract, Tryptone	IDA
GS-6	Habitat	Indoor air	NAS	Indoor air	NAS	Indoor air	NAS	Indoor air	NAS	Indoor air	NAS	Indoor air	NAS	Indoor air	NAS	Indoor air	NAS
6.3	Salinity	Normal	IDA	5% NaCl (w/v)	TAS [11]	Normal	IDA	6.5% NaCl (w/v)	TAS [84]	10% NaCl (w/v)	TAS [88]	10% NaCl (w/v)	TAS [88]	10% NaCl (w/v)	TAS [88]	10% NaCl (w/v)	TAS [88]
22	Oxygen requirement	Aerobic	TAS [23]	Aerobic	TAS [89]	Aerobic	TAS [87]	Aerobic	TAS [30]	Facultative anaerobes	TAS [88]	Facultative anaerobes	TAS [88]	Facultative anaerobes	TAS [88]	Facultative anaerobes	TAS [88]
15	Biotic relationship	Free living	NAS	Symbiont	TAS [11]	Free living	TAS [87]	Free living; symbiont	TAS [84]	Free living	NAS	Free living	NAS	Free living	NAS	Free living	NAS
14	Pathogenicity	nd		nd		nd		nd		nd		nd		nd		nd
4	Geographic location	USA: California: Piedmont	NAS	USA: California: Oakland	NAS	USA: California: Walnut Creek	NAS	USA: California: Oakland	NAS	USA: California: Oakland	NAS	USA: California: Milpitas	NAS	USA: California: Milpitas	NAS	USA: California: Milpitas	NAS
5	Sample collection	2015-03-16	NAS	2015-03-18	NAS	2015-03-17	NAS	2015-03-18	NAS	2015-03-18	NAS	2015-03-31	NAS	2015-03-31	NAS	2015-03-31	NAS
4.1	Latitude	37°49'25.6"	NAS	122°16'21.9"	NAS	122°03'50.1"	NAS	122°16'21.9"	NAS	122°16'21.9"	NAS	121°53'59.0"	NAS	121°53'59.0"	NAS	121°53'59.0"	NAS
4.2	Longitude	122°13'53.9"	NAS	37°48'41.1"	NAS	37°54'49.4"	NAS	37°48'41.1"	NAS	37°48'41.1"	NAS	37°25'57.7"	NAS	37°25'57.7"	NAS	37°25'57.7"	NAS
4.4	Altitude	100 m	NAS	13 m	NAS	40 m	NAS	13 m	NAS	13 m	NAS	6 m	NAS	6 m	NAS	6 m	NAS

^aEvidence codes – IDA inferred from direct assay, TAS traceable author statement, NAS non-traceable author statement, nd not determined. These evidence codes are from the Gene Ontology project [90]

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