Table 3 Genome statistics
Species Attribute | L. plantarum E2C2 | L. plantarum E2C5 | ||
|---|---|---|---|---|
Value | % of Total | Value | % of Total | |
Genome size (bp) | 3,603,563 | 100.00 | 3,615,168 | 100.00 |
DNA coding (bp) | 2,684,877 | 74.5 | 2690, 385 | 74.4 |
DNA G + C (bp) | 1,585,330 | 43.9 | 1589, 803 | 43.9 |
DNA scaffolds | 94 | Â | 99 | Â |
Total genes | 3504 | 100 | 3523 | 100 |
Protein coding genes | 3289 | 93.8 | 3293 | 93.4 |
RNA genes | 94 | 2.6 | 95 | 2.6 |
Pseudo genes | 121 | 3.4 | 135 | 3.8 |
Genes in internal clusters | NA | Â | NA | Â |
Genes with function prediction | 2416 | 68.9 | 2426 | 68.9 |
Genes assigned to COGs | 2868 | 81.8 | 2869 | 81.4 |
Genes with Pfam domains | 2952 | 89.7 | 2969 | 90.1 |
Genes with signal peptides | 278 | 7.9 | 275 | 7.8 |
Genes with transmembrane helices | 755 | 21.5 | 755 | 21.4 |
CRISPR repeats | 1 | 0.028 | 1 | 0.028 |