Table 4 Number of genes associated with general COG functional categories
Code | fSE1C | fSE4S | Description | ||
|---|---|---|---|---|---|
Value | %age | Value | %age | ||
J | 1 | 1.89 | 1 | 1.92 | Translation, ribosomal structure and biogenesis |
A | 0 | 0 | 0 | 0 | RNA processing and modification |
K | 2 | 3.78 | 11 | 21.12 | Transcription |
L | 5 | 9.45 | 19 | 36.48 | Replication, recombination and repair |
B | 0 | 0 | 0 | 0 | Chromatin structure and dynamics |
D | 0 | 0 | 0 | 0 | Cell cycle control, Cell division, chromosome partitioning |
V | 1 | 1.89 | 1 | 1.92 | Defense mechanisms |
T | 0 | 0 | 0 | 0 | Signal transduction mechanisms |
M | 0 | 0 | 0 | 0 | Cell wall/membrane biogenesis |
N | 0 | 0 | 0 | 0 | Cell motility |
U | 0 | 0 | 0 | 0 | Intracellular trafficking and secretion |
O | 0 | 0 | 1 | 1.92 | Posttranslational modification, protein turnover, chaperones |
C | 0 | 0 | 0 | 0 | Energy production and conversion |
G | 0 | 0 | 0 | 0 | Carbohydrate transport and metabolism |
E | 0 | 0 | 0 | 0 | Amino acid transport and metabolism |
F | 0 | 0 | 0 | 0 | Nucleotide transport and metabolism |
H | 0 | 0 | 0 | 0 | Coenzyme transport and metabolism |
I | 0 | 0 | 0 | 0 | Lipid transport and metabolism |
P | 0 | 0 | 1 | 1.92 | Inorganic ion transport and metabolism |
Q | 0 | 0 | 5 | 9.6 | Secondary metabolites biosynthesis, transport and catabolism |
R | 0 | 0 | 2 | 3.84 | General function prediction only |
S | 3 | 4.67 | 10 | 19.2 | Function unknown |
- | 43 | 81.27 | 23 | 44.16 | Not in COGs |