Table 5 General features of the genomes of Agromyces spp. and related organisms used for comparative studies
Organims | Size (Mp) | Plasmids | Contigs | GC% | CDS | rRNA | Isolation source / Characteristics |
|---|---|---|---|---|---|---|---|
A. aureus AR33 | 4.37 | – | 1 | 70.4 | 3928 | 9 | Salix caprea rhizosphere |
A. italicus DMS 16388 | 3.73 | – | 12 | 70.2 | 3370 | 3 | Wall of a tomb |
A. subbeticus DMS 16689 | 4.30 | – | 34 | 69.1 | 3947 | 4 | Wall of a cave |
Agromyces sp. leaf222 | 4.43 | – | 4 | 70.6 | 3905 | 5 | Arabidopsis thaliana leaf |
Agromyces sp. root81 | 4.16 | – | 7 | 69.7 | 3959 | 4 | Arabidopsis thaliana root |
Agromyces sp. root1464 | 4.04 | – | 3 | 70.1 | 3671 | 5 | Arabidopsis thaliana root |
Agromyces sp. soil535 | 4.83 | – | 29 | 70.0 | 4531 | 5 | Soil |
Microbacterium testaceum StLB037 | 3.98 | – | 1 | 70.3 | 3670 | 6 | Potato leaves |
Microbacterium sp. CGR1 | 3.63 | – | 1 | 68.0 | 3465 | 6 | Atacama desert, Alto Andino (elevation 4480 m) |
Clavibacter michiganensis subsp. michiganensis NCPPB 382 | 3.40 | 2 | 1 | 72.5 | 3052 | 6 | Phytopathogen of tomato |
Leifsonia xyli subsp. xyli CTCB07 | 2.58 | – | 1 | 67.7 | 2722 | 3 | Phytopathogen of sugarcane |
Cellulomonas flavigena DSM 20109 | 4.12 | – | 1 | 74.3 | 3742 | 6 | Soil, cellolose- and xylan-degrading |
Streptomyces coelicolor A3(2) | 9.05 | 2 | 1 | 72.0 | 8316 | 18 | Model representative of soil-dwelling organisms |