Table 3 Genome statistics
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 6,715,909 | 100 |
DNA coding (bp) | 6,050,433 | 90.1 |
DNA G + C (bp) | 4,091,158 | 60.7 |
DNA scaffolds | 1 | – |
Total genes | 5887 | 100 |
Protein coding genes | 5773 | 98.1 |
RNA genes | 85 | 1.4 |
Pseudo genes | 29 | 0.5 |
Genes in internal clusters | NA | – |
Genes with function prediction | 4801 | 83.2 |
Genes assigned to COGs | 4481 | 77.6 |
Genes with Pfam domains | 3770 | 65.3 |
Genes with signal peptides | 390 | 6.8 |
Genes with transmembrane helices | 1389 | 24.1 |
CRISPR repeats | NA | – |