Skip to main content

Table 4 Number of genes associated with the general COG functional categories

From: Complete genome sequence and whole-genome phylogeny of Kosmotoga pacifica type strain SLHLJ1T from an East Pacific hydrothermal sediment

Code

Value

% a

Description

J

129

6.80

Translation, ribosomal structure and biogenesis

A

0

0.00

RNA processing and modification

K

53

2.79

Transcription

L

53

2.79

Replication, recombination and repair

B

2

0.11

Chromatin structure and dynamics

D

13

0.69

Cell cycle control, cell division, chromosome partitioning

Y

0

0.00

Nuclear structure

V

20

1.05

Defense mechanisms

T

24

1.27

Signal transduction mechanisms

M

45

2.37

Cell wall/membrane biogenesis

N

2

0.11

Cell motility

Z

0

0.00

Cytoskeleton

W

0

0.00

Extracellular structures

U

17

0.90

Intracellular trafficking and secretion, and vesicular transport

O

49

2.58

Posttranslational modification, protein turnover, chaperones

C

109

5.75

Energy production and conversion

G

128

6.75

Carbohydrate transport and metabolism

E

105

5.54

Amino acid transport and metabolism

F

40

2.11

Nucleotide transport and metabolism

H

34

1.79

Coenzyme transport and metabolism

I

26

1.37

Lipid transport and metabolism

P

80

4.22

Inorganic ion transport and metabolism

Q

14

0.74

Secondary metabolites biosynthesis, transport and catabolism

R

96

5.06

General function prediction only

S

85

4.48

Function unknown

-

773

40.75

Not in COGs

  1. a The total is based on the total number of protein coding genes in the genome