Skip to main content

Table 3 Genome Statistics

From: Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge

Attribute

Value

% of totala

Genome size (bp)

6,306,386

100.00

DNA coding (bp)

5,516,402

87.47

DNA G+C (bp)

4,293,157

68.08

DNA scaffolds

1

100.00

Total genes

5425

100.00

Protein-coding genes

5346

98.54

RNA genes

73

1.34

Pseudo genes

6

0.11

Genes with internal clusters

753

13.86

Genes with function prediction

4068

74.90

Genes assigned to COGs

3329

61.30

Genes with Pfam domains

4327

79.67

Genes with signal peptides

381

7.02

Genes with transmembrane helices

1271

23.40

CRISPR repeats

15

 
  1. aThe total is based on either the size of the genome in base pairs or the total number of total genes in the annotated genome