Table 3 Genome statistics
From: Complete genome anatomy of the emerging potato pathogen Dickeya solani type strain IPO 2222T
Attribute | Value | % of total |
|---|---|---|
Genome size (bp) | 4,919,833 | 100.00 |
DNA coding (bp) | 4,243,944 | 86.33 |
DNA G + C (bp) | 2,767,155 | 56.24 |
DNA scaffolds | 1 | 100.00 |
Total genes | 4,208 | 100.00 |
Protein coding genes | 4,104 | 97.5 |
RNA genes | 104 | 2.5 |
Pseudo genes | 45 | 1.06 |
Genes in internal clusters | 1,093 | 25.97 |
Genes with function prediction | 3,670 | 87.21 |
Genes assigned to COGs | 3,365 | 79.97 |
Genes with Pfam domains | 3,788 | 99.02 |
Genes with signal peptides | 386 | 9.17 |
Genes with transmembrane helices | 953 | 22.65 |
CRISPR repeats | 1 | - |