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Fig. 4 | Standards in Genomic Sciences

Fig. 4

From: Draft genome sequence of Micromonospora sp. DSW705 and distribution of biosynthetic gene clusters for depsipeptides bearing 4-amino-2,4-pentadienoate in actinomycetes

Fig. 4

Hybrid PKS/NRPS gene clusters for depsipeptides bearing 4-amino-2,4-pentadienoate (APDA) moieties in published genome sequences of actinomycete strains. Gene clusters for rakicidins (a), vinylamycin-related compounds (b), BE-43547 (c), and others (d). NRPS and PKS genes for the synthesis of APDAs are shaded in light gray. Terminals of scaffold sequences are shown in dark gray circles. Locus tag numbers of ORFs in this figure are as follows: Micromonospora purpureochromogenes NRRL B-2672, IH31_RS0100575 to IH31_RS0100600; Micromonospora sp. M42, MCBG_00130 to MCBG_00140; “Streptomyces rubellomurinus” ATCC 31215, VM95_RS28100 to VM95_RS28120; Frankia sp. ACN1ag, UK82_23055 to UK82_23085; Frankia sp. CpI1-P, FF86_101835 to FF86_101841; Frankia sp. CpI1-S, FF36_02633 to FF36_02639; Streptomyces davawensis JCM 4913, BN159_0686 to BN159_0681; Streptomyces vitaminophilus DSM 41686T, A3IG_RS0122990 to A3IG_RS0122970; Streptomyces sp. CNH099, B121_RS0112700 to B121_RS0112685 and B121_RS37950; Streptomyces sp. CNQ-509, AA958_29290 to AA958_29325; Streptomyces durhamensis NRRL-ISP-5539T, IO33_RS0129710 to IO33_RS0129695; Streptomyces griseolus NRRL B-2925T, IH14_RS0112325 to IH14_RS0112355; Streptomyces halstedii NRRL ISP-5068T, IG73_RS0111725 to IG73_RS0111755; Streptomyces sp. DpondAA-B6, K379_RS0125155 to K379_RS0125185; Streptomyces sp. NRRL S-1521, ADL30_05665 to ADL30_05635; Streptomyces sp. NTK973, DT87_RS01535 to DT87_RS01505; Streptomyces sp. WMMB 714, H181_RS01075 to H181_RS01105; Streptomyces sp. 769, GZL_RS00255 to GZL_RS00285; Streptomyces sp. MspMP-M5, B073_RS0123900 to B073_RS40860; Nocardiposis sp. CNS639, G011_RS0119410 to G011_RS0119385; Salinispora arenicola CNR107, F583_RS01000000127215 to F583_RS01000000127205; Micromonospora sp. RV43, ABD52_RS02395 to ABD52_RS02415; Kitasatospora griseola MF730-N6, TR51_RS11025 to TR51_RS11045; Streptomyces purpeofuscus NRRL B-1817T, IF01_RS0123020 to IF01_RS0123045; Streptomyces sp. NRRL F-6131, IF39_RS0107420 to IF39_RS0107445; Streptomyces sp. XY431, ADK60_02665 to ADK60_02635; Kitasatospora sp. MBT66, BI06_RS24475 to BI06_RS24440; Streptomyces celluloflavas NRRL B-2493T, IH09_RS02990 to IH09_RS03015; Streptomyces albus subsp. albus NRRL B-2513, ACZ90_11100 to ACZ90_11120

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