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Table 4 Genome statistics

From: Genome sequences and annotation of two urinary isolates of E. coli

Strain E75 E78
Attribute Value % of Totala Value % of Totala
Genome size (bp) 5,032,328 100.00 5,021,201 100.00
DNA coding (bp) 4,466,253 88.75 4,348,152 86.60
DNA G + C (bp) 2,537,751 50.43 2,525,290 50.29
DNA scaffolds 463 na 60 na
Total genes 4666 100.00 4839 100.00
Protein coding genes 4581 98.18 4743 98.02
RNA genes 85 1.82 96 1.98
Pseudo genes 0 0 0 0
Genes in internal clusters na na na na
Genes with function prediction 3290 70.51 3401 70.28
Genes assigned to COGs 3496 74.92 3603 74.46
Genes with Pfam domains 2067 44.30 2233 46.15
Genes with signal peptides 361 7.74 374 7.73
Genes with transmembrane helices 1083 23.21 1114 23.02
CRISPR repeats 6   5  
  1. aThe total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome