Genome sequences and annotation of two urinary isolates of E. coli

Table 4 Genome statistics

Strain	E75		E78
Attribute	Value	% of Total^a	Value	% of Total^a
Genome size (bp)	5,032,328	100.00	5,021,201	100.00
DNA coding (bp)	4,466,253	88.75	4,348,152	86.60
DNA G + C (bp)	2,537,751	50.43	2,525,290	50.29
DNA scaffolds	463	na	60	na
Total genes	4666	100.00	4839	100.00
Protein coding genes	4581	98.18	4743	98.02
RNA genes	85	1.82	96	1.98
Pseudo genes	0	0	0	0
Genes in internal clusters	na	na	na	na
Genes with function prediction	3290	70.51	3401	70.28
Genes assigned to COGs	3496	74.92	3603	74.46
Genes with Pfam domains	2067	44.30	2233	46.15
Genes with signal peptides	361	7.74	374	7.73
Genes with transmembrane helices	1083	23.21	1114	23.02
CRISPR repeats	6		5

^aThe total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome

ISSN: 2524-6372