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Table 5 Number of genes associated with general COG functional categories

From: Two draft genome sequences of Pseudomonas jessenii strains isolated from a copper contaminated site in Denmark

  P. jessenii C2 P. jessenii H16  
Code Value %a Value %a Description
J 183 3.14 186 3.10 Translation, ribosomal structure and biogenesis
A 1 0.02 2 0.03 RNA processing and modification
K 425 7.31 425 7.09 Transcription
L 147 2.53 135 2.25 Replication, recombination and repair
B 2 0.34 3 0.05 Chromatin structure and dynamics
D 35 0.60 35 0.58 Cell cycle control, Cell division, chromosome partitioning
V 59 1.01 57 0.95 Defense mechanisms
T 368 6.33 389 6.49 Signal transduction mechanisms
M 239 4.11 282 4.70 Cell wall/membrane biogenesis
N 128 2.20 135 2.25 Cell motility
U 119 2.05 128 2.14 Intracellular trafficking and secretion
O 175 3.01 168 2.80 Posttranslational modification, protein turnover, chaperones
C 312 5.37 278 4.64 Energy production and conversion
G 219 3.77 247 4.12 Carbohydrate transport and metabolism
E 515 8.86 497 8.29 Amino acid transport and metabolism
F 85 1.46 99 1.65 Nucleotide transport and metabolism
H 177 3.04 193 3.22 Coenzyme transport and metabolism
I 237 4.08 194 3.24 Lipid transport and metabolism
P 300 5.16 286 4.77 Inorganic ion transport and metabolism
Q 142 2.44 129 2.15 Secondary metabolites biosynthesis, transport and catabolism
R 532 9.15 572 9.54 General function prediction only
S 444 7.64 451 7.52 Function unknown
- 970 16.68 1104 18.42 Not in COGs
  1. aThe total is based on the total number of protein coding genes in the genome