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Table 5 Number of genes associated with general COG functional categories

From: Two draft genome sequences of Pseudomonas jessenii strains isolated from a copper contaminated site in Denmark

 

P. jessenii C2

P. jessenii H16

 

Code

Value

%a

Value

%a

Description

J

183

3.14

186

3.10

Translation, ribosomal structure and biogenesis

A

1

0.02

2

0.03

RNA processing and modification

K

425

7.31

425

7.09

Transcription

L

147

2.53

135

2.25

Replication, recombination and repair

B

2

0.34

3

0.05

Chromatin structure and dynamics

D

35

0.60

35

0.58

Cell cycle control, Cell division, chromosome partitioning

V

59

1.01

57

0.95

Defense mechanisms

T

368

6.33

389

6.49

Signal transduction mechanisms

M

239

4.11

282

4.70

Cell wall/membrane biogenesis

N

128

2.20

135

2.25

Cell motility

U

119

2.05

128

2.14

Intracellular trafficking and secretion

O

175

3.01

168

2.80

Posttranslational modification, protein turnover, chaperones

C

312

5.37

278

4.64

Energy production and conversion

G

219

3.77

247

4.12

Carbohydrate transport and metabolism

E

515

8.86

497

8.29

Amino acid transport and metabolism

F

85

1.46

99

1.65

Nucleotide transport and metabolism

H

177

3.04

193

3.22

Coenzyme transport and metabolism

I

237

4.08

194

3.24

Lipid transport and metabolism

P

300

5.16

286

4.77

Inorganic ion transport and metabolism

Q

142

2.44

129

2.15

Secondary metabolites biosynthesis, transport and catabolism

R

532

9.15

572

9.54

General function prediction only

S

444

7.64

451

7.52

Function unknown

-

970

16.68

1104

18.42

Not in COGs

  1. aThe total is based on the total number of protein coding genes in the genome