Table 4 Genome statistics
From: Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 3,692,576 | 100.00Â % |
DNA coding (bp) | 3,199,417 | 86.64Â % |
DNA G + C (bp) | 2,362,214 | 63.97 % |
DNA scaffolds | 3 | Â |
Number of replicons | 3 | Â |
Extrachromosomal elements | 1 | Â |
Total genes | 3725 | 100.00Â % |
Protein coding genes | 3665 | 98.39Â % |
RNA genes | 60 | 1.61Â % |
Pseudo genes | 105 | 2.82Â % |
Genes in internal clusters | 2009 | 53.93Â % |
Genes with function prediction | 2143 | 57.53Â % |
Genes assigned to COGs | 2226 | 59.76Â % |
Genes with Pfam domains | 2162 | 58.04Â % |
Genes with signal peptides | 396 | 10.63Â % |
Genes with transmembrane helices | 779 | 20.91Â % |
CRISPR repeats | 3 | Â |