Table 3 Genome statistics
Attribute | Value | % of total |
|---|---|---|
Genome size (bp) | 2,958,498 | 100.00 |
DNA coding (bp) | 2,664,218 | 90.05 |
DNA G + C (bp) | 1,977,520 | 66.84 |
DNA scaffolds | 43 | Â |
Total genes | 2,968 | 100.00 |
Protein coding genes | 2,902 | 97.78 |
RNA genes | 66 | 2.22 |
Pseudo genes | 102 | 3.43 |
Genes in internal clusters | 116 | 3.99 |
Genes with function prediction | 2,348 | 79.11 |
Genes assigned to COGs | 2,048 | 69.00 |
Genes with Pfam domains | 2,457 | 82.78 |
Genes with signal peptides | 270 | 9.10 |
Genes with transmembrane helices | 710 | 23.92 |
CRISPR repeats | 1 | Â |