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Table 4 Number of genes associated with general COG functional categories

From: Complete genome sequences of the Serratia plymuthica strains 3Rp8 and 3Re4-18, two rhizosphere bacteria with antagonistic activity towards fungal phytopathogens and plant growth promoting abilities

Code 3Rp8 3Re4-18 Description
  Value %age Value %age  
J 169 2.90 167 2.97 Translation, ribosomal structure and biogenesis
A 1 0.02 1 0.02 RNA processing and modification
K 441 7.57 445 7.92 Transcription
L 170 2.92 152 2.70 Replication, recombination and repair
B 1 0.02 1 0.02 Chromatin structure and dynamics
D 27 0.46 28 0.50 Cell cycle control, cell division, chromosome partitioning
V 58 1.00 56 1.00 Defense mechanisms
T 141 2.42 146 2.60 Signal transduction mechanisms
M 256 4.40 256 4.55 Cell wall/membrane biogenesis
N 99 1.70 90 1.60 Cell motility
U 54 0.93 49 0.87 Intracellular trafficking and secretion
O 153 2.63 148 2.63 Posttranslational modification, protein turnover, chaperones
C 261 4.48 259 4.61 Energy production and conversion
G 412 7.08 406 7.22 Carbohydrate transport and metabolism
E 442 7.59 433 7.70 Amino acid transport and metabolism
F 89 1.53 90 1.60 Nucleotide transport and metabolism
H 144 2.47 145 2.58 Coenzyme transport and metabolism
I 150 2.58 138 2.45 Lipid transport and metabolism
P 246 4.22 246 4.38 Inorganic ion transport and metabolism
Q 96 1.65 91 1.62 Secondary metabolites biosynthesis, transport and catabolism
R 383 6.58 385 6.85 General function prediction only
S 284 4.88 285 5.07 Function unknown
- 1746 29.98 1605 28.55 Not in COGs
  1. The percentage is based on the total number of protein coding genes in the genome based on BASys gene prediction [79]