Table 3 Nucleotide content and gene count levels of the genome
Attribute | Value | % of total |
|---|---|---|
Genome size (bp) | 3,097,763 | 100.00 |
DNA coding (bp) | 2,806,423 | 90.60 |
DNA G + C (bp) | 1,867,527 | 60.29 |
DNA scaffolds | 1 | 100.00 |
Total genes | 2,732 | 100.00 |
Protein coding genes | 2,676 | 97.95 |
RNA genes | 56 | 2.05 |
Pseudo genes | 56 | 2.05 |
Genes in internal clusters | 103 | 3.77 |
Genes with function prediction | 2,049 | 75 |
Genes assigned to COGs | 1,701 | 62.26 |
Genes with Pfam domains | 2,280 | 83.46 |
Genes with signal peptides | 175 | 6.41 |
Genes with transmembrane helices | 672 | 24.60 |
CRISPR repeats | 2 | Â |