Skip to main content

Advertisement

Table 3 Nucleotide content and gene count levels of the genome

From: Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2T, a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes

Attribute Value % of total
Genome size (bp) 3,097,763 100.00
DNA coding (bp) 2,806,423 90.60
DNA G + C (bp) 1,867,527 60.29
DNA scaffolds 1 100.00
Total genes 2,732 100.00
Protein coding genes 2,676 97.95
RNA genes 56 2.05
Pseudo genes 56 2.05
Genes in internal clusters 103 3.77
Genes with function prediction 2,049 75
Genes assigned to COGs 1,701 62.26
Genes with Pfam domains 2,280 83.46
Genes with signal peptides 175 6.41
Genes with transmembrane helices 672 24.60
CRISPR repeats 2