Table 3 Genome statistics
From: Whole genome shotgun sequence of Bacillus amyloliquefaciens TF28, a biocontrol entophytic bacterium
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 3,987,635 | 100.00 |
DNA coding (bp) | 3,571,596 | 89.57 |
DNA G + C (bp) | 1,849,465 | 46.38 |
DNA scaffolds | 3 | - |
Total genes | 3863 | 100.00 |
Protein coding genes | 3754 | 97.18 |
RNA genes | 76 | 1.97 |
Pseudo genes | 38 | 0.98 |
Genes in internal clusters | 1554 | 40.23 |
Genes with function prediction | 2941 | 76.13 |
Genes assigned to COGs | 3218 | 83.30 |
Genes with Pfam domains | 3292 | 85.21 |
Genes with signal peptides | 204 | 5.28 |
Genes with transmembrane helices | 1041 | 26.95 |
CRISPR repeats | 3 | - |