Table 3 Genome statistics
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 3,937,944 | 100 |
DNA coding (bp) | 3,384,768 | 85.95 |
DNA G + C (bp) | 1,537,664 | 39.05 |
DNA scaffolds | 196 | 100 |
Total genes | 3875 | 100 |
Protein coding genes | 3672 | 94.76 |
RNA genes | 68 | 1.75 |
Pseudo genes | 135 | 3.48 |
Genes in internal clusters | - | - |
Genes with function prediction | 2913 | 75.17 |
Genes assigned to COGs | 3174 | 81.91 |
Genes with Pfam domains | 3,002 | 77.47 |
Genes with signal peptides | 313 | 8.08 |
Genes with transmembrane helices | 882 | 22.76 |
CRISPR repeats | 0 | - |