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Table 6 Number of genes associated with general COG functional categories for P. fulva DSM 17717T, P. parafulva DSM 17004T, and P. cremoricolorata DSM 17059T

From: High quality draft genome sequences of Pseudomonas fulva DSM 17717T, Pseudomonas parafulva DSM 17004T and Pseudomonas cremoricolorata DSM 17059T type strains

Code P. fulva DSM 17717T P. parafulva DSM 17004T P. cremoricolorata DSM 17059T Description
Value % age Value % age Value % age
J 225 5.12 237 5.18 230 5.43 Translation, ribosomal structure and biogenesis
A 1 0.02 1 0.02 1 0.02 RNA processing and modification
K 281 6.39 317 6.93 274 6.47 Transcription
L 115 2.62 121 2.64 116 2.74 Replication, recombination and repair
B 2 0.05 4 0.09 1 0.02 Chromatin structure and dynamics
D 37 0.84 38 0.83 38 0.90 Cell cycle control, Cell division, chromosome partitioning
V 70 1.59 78 1.70 69 1.63 Defense mechanisms
X 32 0.73 30 0.66 44 1.04 Mobilome: prophages, transposons
W 17 0.39 17 0.37 13 0.31 Extracellular structures
T 246 5.59 267 5.84 230 5.43 Signal transduction mechanisms
M 202 4.59 220 4.81 208 4.91 Cell wall/membrane biogenesis
N 107 2.43 110 2.40 97 2.29 Cell motility
U 61 1.39 56 1.22 73 1.72 Intracellular trafficking and secretion
O 137 3.12 140 3.06 137 3.23 Posttranslational modification, protein turnover, chaperones
C 240 5.46 253 5.53 212 5.00 Energy production and conversion
G 170 3.87 173 3.78 151 3.56 Carbohydrate transport and metabolism
E 390 8.87 427 9.33 366 8.64 Amino acid transport and metabolism
F 88 2.00 94 2.05 78 1.84 Nucleotide transport and metabolism
H 203 4.62 209 4.57 195 4.60 Coenzyme transport and metabolism
I 168 3.82 174 3.80 169 3.99 Lipid transport and metabolism
P 213 4.84 240 5.25 232 5.47 Inorganic ion transport and metabolism
Q 79 1.80 96 2.10 89 2.10 Secondary metabolites biosynthesis, transport and catabolism
R 297 6.75 311 6.80 280 6.61 General function prediction only
S 192 4.37 198 4.33 181 4.27 Function unknown
- 1235 28.09 1204 26.32 1164 27.47 Not in COGs
  1. The total is based on the total number of protein coding genes in the genome