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Table 5 Genome statistics for P. fulva DSM 17717T, P. parafulva DSM 17004T and P. cremoricolorata DSM 17059T

From: High quality draft genome sequences of Pseudomonas fulva DSM 17717T, Pseudomonas parafulva DSM 17004T and Pseudomonas cremoricolorata DSM 17059T type strains

Attribute P. fulva DSM 17717T P. parafulva DSM 17004T P. cremoricolorata DSM 17059T
Value % of Totala Value % of Totala Value % of Totala
Genome size (bp) 4,770,636 100.00 4,958,587 100.00 4,660,374 100.00
DNA coding (bp) 4,280,442 89.72 4,475,423 90.26 4,196,318 90.04
DNA G + C (bp) 2,943,912 61.72 3,095,099 62.42 2,958,082 63.47
DNA scaffolds/contigsb 48/54 100.00 33/40 100.00 27/27 100.00
Total genes 4,397 100.00 4,575 100.00 4,238 100.00
Protein-coding genes 4,278 97.29 4,459 97.46 4,119 97.19
RNA genes 119 2.71 116 2.54 119 2.81
Pseudo genes 0 0.00 0 0.00 0 0.00
Genes in internal clusters 448 10.19 421 9.20 381 8.99
Genes with function prediction 3,472 78.96 3,687 80.59 3,377 79.68
Genes assigned to COGs 3,162 71.91 3,371 73.68 3,074 72.53
Genes with Pfam domains 3,707 84.31 3,892 85.07 3,588 84.66
Genes with signal peptides 443 10.08 476 10.40 448 10.57
Genes with transmembrane helices 941 21.40 992 21.68 910 21.47
CRISPR repeats 0 0.00 0 0.00 0 0.00
  1. aThe total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome
  2. bNumber of DNA scaffolds and contigs, available in the JGI website and NCBI databases, respectively