Table 3 Genome statistics
Attribute | Value | % of total |
|---|---|---|
Genome size (bp) | 5,632,035 | 100.00 |
DNA coding (bp) | 4,742,170 | 84.20 |
DNA G+C (bp) | 2,617,048 | 46.47 |
DNA scaffolds | 3 | 100.00 |
Total genes | 5006 | 100.00 |
Protein coding genes | 4914 | 98.16 |
RNA genes | 92 | 1.84 |
Pseudo genes | 146 | 2.92 |
Genes in internal clusters | 880 | 17.58 |
Genes with function prediction | 3505 | 70.02 |
Genes assigned to COGs | 2625 | 52.44 |
Genes with Pfam domains | 3742 | 74.75 |
Genes with signal peptides | 253 | 5.05 |
Genes with transmembrane helices | 1157 | 23.11 |
CRISPR repeats | 19 | 0.25 |