Table 5 Putative genes related to functional enzymes for potential PGPR effects predicted from the genome sequence of Pseudomonas lutea OK2T
Function ID | Name |
|---|---|
Phosphate solubilization | |
 KO:K01113 | alkaline phosphatase D [EC:3.1.3.1] (phoD) |
 KO:K03778* | D-lactate dehydrogenase [EC:1.1.1.28] (ldhA) * |
 KO:K00031 | isocitrate dehydrogenase [EC:1.1.1.42] (icd) |
 KO:K01647 | citrate synthase [EC:2.3.3.1] (gltA) |
 KO:K00117 | quinoprotein glucose dehydrogenase [EC:1.1.5.2] (gcd) |
Antibiotic resistance | |
 KO:K17836* | beta-lactamase class A (penicillinase) [EC:3.5.2.6] (penP) * |
 KO:K08218 | MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG (ampG) |
 KO:K03806 | beta-lactamase expression regulator, N-acetyl-anhydromuramyl-L-alanine amidase AmpD protein (ampD) |
 KO:K03807 | Membrane protein required for beta-lactamase induction, AmpE protein (ampE) |
 KO:K05365 | penicillin-binding protein 1B [EC:2.4.1.129 3.4.-.-] (mrcB) |
 KO:K05366 | penicillin-binding protein 1A [EC:2.4.1.-3.4.-.-] (mrcA) |
 KO:K05367 | penicillin-binding protein 1C [EC:2.4.1.-] (pbpC) |
 KO:K05515 | penicillin-binding protein 2 (mrdA) |
 KO:K07552 | MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein (bcr) |
 KO:K08223 | MFS transporter, FSR family, fosmidomycin resistance protein (fsr) |
 KO:K05595* | multiple antibiotic resistance protein (marC) * |
 KO:K18138 | multidrug efflux pump (acrB, mexB, adeJ, smeE, mtrD, cmeB) |
 KO:K07799 | putative multidrug efflux transporter MdtA (mdtA) |
 KO:K07788 | RND superfamily, multidrug transport protein MdtB (mdtB) |
 KO:K07789 | RND superfamily, multidrug transport protein MdtC (mdtC) |
Toxins | |
 KO:K11068 | membrane damaging toxins Type II toxin, pore-forming toxin hemolysin III (hlyIII) |
Metal ion resistance | |
 KO:K07213 | copper chaperone |
 KO:K07245 | putative copper resistance protein D (pcoD) |
 KO:K07665 | two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR (cusR) |
 KO:K06189 | magnesium and cobalt transporter (corC) |
 KO:K08970* | nickel/cobalt exporter (rcnA) * |
 KO:K06213 | magnesium transporter (mgtE) |
 KO:K16074 | zinc transporter (zntB) |
 KO:K09815 | zinc transport system substrate-binding protein (znuA) |
 KO:K09816 | zinc transport system permease protein (znuB) |
 KO:K09823 | Fur family transcriptional regulator, zinc uptake regulator (zur) |
 KO:K03893 | arsenical pump membrane protein (arsB) |
 KO:K11811* | arsenical resistance protein ArsH (arsH) * |
Siderophore | |
 KO:K02362 | enterobactin synthetase component D [EC:2.7.8.-] (entD) |
 KO:K16090 | catecholate siderophore receptor (fiu) |
Attachment and colonization in the plant rhizosphere | |
 KO:K04095* | cell filamentation protein (fic) * |
 KO:K06596* | chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) (chpA) * |
 KO:K02655, K02656, K02662, K02663, K02664, K02665, K02666, K02671, K02672, K02673, K02674, K02676, K02650*, K02652, K02653 | type IV pilus assembly protein PilE (pilE), PilF (pilF), PilM (pilM), PilN (pilN), PilO (pilO), PilP (pilP), PilQ (pilQ), PilV (pilV), PilW (pilW), PilX (pilX), PilY1 (pilY1), PilZ (pilZ), PilA (pilA)*, PilB (pilB), PilC (pilC) |
 KO:K08086, K02280 | pilus assembly protein FimV (fimV), CpaC (cpaC) |
 KO:K02657, K02658 | twitching motility two-component system response regulator PilG (pilG), PilH (pilH) |
 KO:K02659, K02660, K02669, K02670* | twitching motility protein PilI (pilI), PilJ (pilJ), PilT (pilT), PilU (pilU) * |
Secretion system | |
 KO:K03196*, K03198*, K03199*, K03200*, K03203*, K03204*, K03205* | type IV secretion system protein VirB11 (virB11) *, VirB3 (virB3) *, VirB4 (virB4) *, VirB5 (virB5) *, VirB8 (virB8) *, VirB9 (virB9) *, VirD4 (virD4) * |
 KO:K11891*, K11892*, K11893*, K11894*, K11895*, K11896*, K11900*, K11901* | type VI secretion system protein ImpL (impL) *, ImpK (impK) *, ImpJ (impJ) *, ImpI (impI) *, ImpH (impH) *, ImpG (impG) *, ImpC (impC) *, ImpB (impB) * |
 KO:K11903*, K11904* | type VI secretion system secreted protein Hcp (hcp) *, VgrG (vgrG) * |
 KO:K11905* | type VI secretion system protein* |
 KO:K11906*, K11907*, K11910* | type VI secretion system protein VasD (vasD) *, VasG (vasG) *, VasJ (vasJ) * |
Plant hormone auxin biosynthesis | |
 KO:K01696 | tryptophan synthase [EC:4.2.1.20] (trpB) |
 KO:K00766 | anthranilate phosphoribosyltransferase [EC:2.4.2.18] (trpD) |
 KO:K01817 | phosphoribosylanthranilate isomerase [EC:5.3.1.24] (trpF) |