Table 3 Genome statistics
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 5,647,497 | 100.00 |
DNA coding (bp) | 4,778,153 | 84.61 |
DNA G + C (bp) | 3,397,087 | 60.15 |
DNA scaffolds | 5 | 100.00 |
Total genes | 4,941 | 100.00 |
Protein coding genes | 4,846 | 98.08 |
RNA genes | 95 | 1.92 |
Pseudo genes | 239 | 4.84 |
Genes in internal clusters | 1,402 | 26.64 |
Genes with function prediction | 4,102 | 83.02 |
Genes assigned to COGs | 3,507 | 70.98 |
Genes with Pfam domains | 4,026 | 81.48 |
Genes with signal peptides | 485 | 9.82 |
Genes with transmembrane helices | 1,026 | 20.77 |
CRISPR repeats | 0 | 0.00 |