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Fig. 4 | Standards in Genomic Sciences

Fig. 4

From: Complete genome sequence of thermophilic Bacillus smithii type strain DSM 4216T

Fig. 4

Reconstruction of central carbon metabolism of B. smithii DSM 4216T. Blue lines indicate pathways of which the EC-number was identified only via domainome analysis; grey lines indicate pathways unidentified by both RAST annotation and domainome analysis. Abbreviations: XI: xylose isomerase; XK: xylulokinase; PTS: phosphotransferase system; GK: glucokinase; glpF: glycerol facilitator; glyK: glycerol kinase; Gly3P-DH: glycerol-3-phosphate dehydrogenase; PGI: glucose-6-phosphate isomerase; G6PDH: glucose-6-phosphate dehydrogenase; 6PGDH: 6-phosphogluconate dehydrogenase; RPI: phosphopentose isomerase; RPE: phosphopentose epimerase; TKL: transketolase; TAL: transaldolase; FBP: fructose bisphosphatase; PFK: phosphofructokinase; FBA: fructose bis-phosphate aldolase; TPI: triosephosphate isomerase; GAP: glyceraldehyde 3-phosphate dehydrogenase; PGK: phosphoglycerate kinase; PGM: phosphoglycerate mutase; ENO: enolase; PCK: phosphoenol pyruvate carboxykinase; PPC: phosphoenol pyruvate carboxylase; PYK: pyruvate kinase; PYC: pyruvate carboxylase; PDHC: pyruvate dehydrogenase complex; ME: malic enzyme; MDH: malate dehydrogenase; MQO: malate:quinone oxidoreductase; CS: citrate synthase; ACN: aconitase; ICL: isocitrate lyase; MS: malate synthase; ICD: isocitrate dehydrogenase; OOR: 2-oxoglutarate reductase; ODH: 2-oxoglutratae dehydrogenase; SCS: succinyl-CoA synthetase; SDH: succinate dehydrogenase; FH: fumarate hydratase; ALS: acetolactate synthase; NOD: non-enzymatic oxidative decarboxylation; BDH: butanediol dehydrogenase; ACH: acetoin dehydrogenase; LDHL: L-lactate dehydrogenase; ACDH: acetyl-CoA dehydrogenase; ADH: alcohol dehydrogenase; ACS: acetyl-CoA synthetase; MGS: methylglyoxal synthase; MGR: methylglyoxal reductase; GLXI: glyoxalase I; GLXII: glyoxalase II; LADH: lactaldehyde dehydrogenase

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