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Table 3 Nucleotide content and gene count levels of the genome

From: Draft genomic sequence of a chromate- and sulfate-reducing Alishewanella strain with the ability to bioremediate Cr and Cd contamination

Attribute Genome (total)
  Value % of totala
Genome size (bp) 3,488,867 100.00
DNA coding (bp) 3,117,033 89.34
DNA G + C (bp) 1,759,785 50.44
DNA scaffolds 133 100.00
Contigs 149 100.00
Total genesb 3,282  
RNA genes 80  
Pseudo genes 73  
Protein-coding genes 3,132 100.00
Genes in internal clusters 1,190 37.99
Genes with function prediction 2,388 76.25
Genes assigned to COGs 2,249 71.81
Genes with Pfam domains 2,710 86.53
Genes with signal peptides 367 11.72
Genes with transmembrane helices 1,101 35.15
CRISPR repeats 1  
  1. aThe total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome
  2. bAlso includes 73 pseudogenes, 73 tRNA genes, 5 rRNAs and 2 ncRNA