Table 3 Genome statistics
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 3,210,113 | 100.00 |
DNA coding (bp) | 2,758,471 | 85.93 |
DNA G + C (bp) | 1,709,486 | 53.25 |
DNA scaffolds | 1 | 100.00 |
Total genes | 3073 | 100.00 |
Protein coding genes | 3018 | 98.2 |
RNA genes | 55 | 1.79 |
Pseudo genes | 130 | 4.23 |
Genes with internal clusters | 394 | 12.82 |
Genes with function prediction | 2232 | 72.63 |
Genes assigned to COGs | 1849 | 60.17 |
Genes with Pfam domains | 2303 | 74.94 |
Genes with signal peptides | 290 | 9.44 |
Genes with transmembrane helices | 741 | 24.11 |
CRISPR repeats | 1 | 0.02 |