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Table 4 Numbers of genes associated with general COG functional categories

From: Draft genome sequence of Mycobacterium rufum JS14T, a polycyclic-aromatic-hydrocarbon-degrading bacterium from petroleum-contaminated soil in Hawaii

Code

Value

% age

Description

J

181

4.25

Translation, ribosomal structure and biogenesis

A

1

0.02

RNA processing and modification

K

353

8.29

Transcription

L

118

2.77

Replication, recombination and repair

B

0

0.00

Chromatin structure and dynamics

D

32

0.75

Cell cycle control, cell division, chromosome partitioning

V

98

2.30

Defense mechanisms

T

173

4.06

Signal transduction mechanisms

M

210

4.93

Cell wall/membrane/envelope biogenesis

N

12

0.28

Cell motility

U

22

0.52

Intracellular trafficking, secretion, and vesicular transport

O

142

3.34

Post-translational modification, protein turnover, chaperones

C

312

7.33

Energy production and conversion

G

245

5.76

Carbohydrate transport and metabolism

E

333

7.82

Amino acid transport and metabolism

F

89

2.09

Nucleotide transport and metabolism

H

266

6.25

Coenzyme transport and metabolism

I

422

9.91

Lipid transport and metabolism

P

224

5.26

Inorganic ion transport and metabolism

Q

264

6.20

Secondary metabolites biosynthesis, transport and catabolism

R

516

12.12

General function prediction only

S

209

4.91

Function unknown

W

2

0.05

Extracellular structures

X

33

0.78

Mobilome: prophages, transposons

-

2195

37.43

Not in COGs

  1. The total is based on the total number of protein coding genes in the annotated genome