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Table 4 Numbers of genes associated with general COG functional categories

From: Draft genome sequence of Mycobacterium rufum JS14T, a polycyclic-aromatic-hydrocarbon-degrading bacterium from petroleum-contaminated soil in Hawaii

Code Value % age Description
J 181 4.25 Translation, ribosomal structure and biogenesis
A 1 0.02 RNA processing and modification
K 353 8.29 Transcription
L 118 2.77 Replication, recombination and repair
B 0 0.00 Chromatin structure and dynamics
D 32 0.75 Cell cycle control, cell division, chromosome partitioning
V 98 2.30 Defense mechanisms
T 173 4.06 Signal transduction mechanisms
M 210 4.93 Cell wall/membrane/envelope biogenesis
N 12 0.28 Cell motility
U 22 0.52 Intracellular trafficking, secretion, and vesicular transport
O 142 3.34 Post-translational modification, protein turnover, chaperones
C 312 7.33 Energy production and conversion
G 245 5.76 Carbohydrate transport and metabolism
E 333 7.82 Amino acid transport and metabolism
F 89 2.09 Nucleotide transport and metabolism
H 266 6.25 Coenzyme transport and metabolism
I 422 9.91 Lipid transport and metabolism
P 224 5.26 Inorganic ion transport and metabolism
Q 264 6.20 Secondary metabolites biosynthesis, transport and catabolism
R 516 12.12 General function prediction only
S 209 4.91 Function unknown
W 2 0.05 Extracellular structures
X 33 0.78 Mobilome: prophages, transposons
- 2195 37.43 Not in COGs
  1. The total is based on the total number of protein coding genes in the annotated genome