Table 3 Genome statistics
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 6,176,413 | 100.00 |
DNA coding (bp) | 5,622,516 | 91.03 |
DNA G + C (bp) | 4,277,025 | 69.25 |
DNA scaffolds | 4 | 100.00 |
Total genes | 5864 | 100.00 |
Protein-coding genes | 5810 | 99.08 |
RNA genes | 54 | 0.92 |
Pseudogenes | 367 | 6.26 |
Genes in internal clusters | 944 | 16.10 |
Genes with function prediction | 4498 | 76.71 |
Genes assigned to COGs | 3669 | 62.57 |
Genes with Pfam domains | 4544 | 77.49 |
Genes with signal peptides | 314 | 5.35 |
Genes with transmembrane helices | 1227 | 20.92 |
CRISPR repeats | 0 | 0.00 |