Skip to main content

Table 3 Genome statistics

From: Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

  DSM 19838T DSM 23547T
Attribute Number % of Total Number % of Total
Genome size (bp) 3,513,826 100.0 3,269,398 100.0
DNA coding (bp) 3,220,860 91.7 3,025,367 92.5
DNA G + C (bp) 1,296,572 36.9 1,292,347 39.5
DNA, scaffolds 18 100.0 8 100.0
Total genes 3,253 100.0 3,045 100.0
Protein coding genes 3,199 98.3 2,984 98.0
RNA genes 54 1.7 61 2.0
Pseudo genes 21 0.7 27 0.9
Genes in internal clusters 216 6.6 174 5.7
Genes with function prediction 2,464 75.8 2,302 75.6
Genes assigned to COGs 1,863 57.3 1,747 75.6
Genes with Pfam domains 2,564 78.8 2,409 79.1
Genes with signal peptides 334 10.3 347 11.4
Genes with transmembrane helices 766 23.6 662 21.7
CRISPR repeats 1 0.1 0 0.0