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Fig. 5 | Standards in Genomic Sciences

Fig. 5

From: Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

Fig. 5

A pectin-like PUL of G. echinicola DSM 19838T and other Flavobacteriaceae. A similar PUL was identified in Flavobacterium johnsoniae UW101T by McBride et al. [16]. Locus tags are given below both the first and last gene of the loci. Accession numbers in brackets are GenBank accession numbers of the corresponding contig. Investigation of syntenic loci was done using MultiGeneBlast [57]. A description of glycoside hydrolase (GH), polysaccharide lyase (PL) and carbohydrate esterase (CE) families can be seen at the CAZy homepage [58, 59]. The pectin-like polysaccharide decomposition pathway, encoded by these genes, is shown in Figure S6 in the Additional file 2. SusD, SusD-like protein; LacI, LacI family transcriptional regulator; MFS, major facilitator superfamily transporter; KduD, 2-keto-3-deoxy-d-gluconate-dehydrogenase; UxaB, altronate oxidoreductase; UxaC, glucuronate isomerase; KdgA, 2-keto-3-deoxygluconate-6-phosphate aldolase; KdgF, pectin degradation protein; KduI, 5-dehydro-4-deoxy- d-glucuronate isomerase; KdgK, 2-dehydro-3-deoxygluconokinase; UxuA, mannonate dehydratase; UxuB, d-mannonate oxidoreductase; UxaE, d-tagaturonate epimerase

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Environmental Microbiome

ISSN: 2524-6372