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Table 4 Number of protein coding genes of the methicillin-resistant Staphylococcus aureus GV69 strain associated with the general COG functional categories

From: Complete genome sequence of an agr-dysfunctional variant of the ST239 lineage of the methicillin-resistant Staphylococcus aureus strain GV69 from Brazil

Code

Value

%agea

Description

J

146

5.29

Translation

A

0

0.00

RNA processing and modification

K

140

5.08

Transcription

L

169

6.13

Replication, recombination, and repair

B

0

0.00

Chromatin structure and dynamics

D

28

1.02

Cell cycle control, mitosis, and meiosis

Y

0

0.00

Nuclear structure

V

40

1.45

Defense mechanisms

T

44

1.60

Signal transduction mechanisms

M

107

3.88

Cell wall/membrane biogenesis

N

3

0.11

Cell motility

Z

0

0.00

Cytoskeleton

W

0

0.00

Extracellular structures

U

29

1.05

Intracellular trafficking and secretion

O

69

2.50

Posttranslational modification, protein turnover, chaperones

C

97

3.52

Energy production and conversion

G

139

5.04

Carbohydrate transport and metabolism

E

177

6.42

Amino acid transport and metabolism

F

71

2.57

Nucleotide transport and metabolism

H

95

3.44

Coenzyme transport and metabolism

I

53

1.92

Lipid transport and metabolism

P

145

5.26

Inorganic ion transport and metabolism

Q

31

1.12

Secondary metabolite biosynthesis, transport, and catabolism

R

287

10.41

General function prediction only

S

228

8.27

Function unknown

-

660

23.93

Not in COGs

  1. aThe total is based on the total number of protein coding genes in the annotated genome