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Fig. 2 | Standards in Genomic Sciences

Fig. 2

From: The complete genome sequence of Eubacterium limosum SA11, a metabolically versatile rumen acetogen

Fig. 2

Phylogenetic tree highlighting the position of E. limosum SA11 relative to the type strains of the other Eubacterium species. The evolutionary history was inferred using the Neighbor-Joining method [43]. The optimal tree with the sum of branch length = 0.83983608 is shown. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1000 replicates) is shown next to the branches [44]. The tree is drawn to scale, with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree. The evolutionary distances were computed using the Kimura 2-parameter method [45] and are in the units of the number of base substitutions per site. The rate variation among sites was modeled with a gamma distribution (shape parameter = 1). The analysis involved 16 nucleotide sequences. All positions containing gaps and missing data were eliminated. There were a total of 1214 positions in the final dataset. Evolutionary analyses were conducted in MEGA6 [46]. Species with strain genome sequencing projects registered in the Genomes Online Database (GOLD) [47] are labeled with an asterisk

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