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Table 1 Classification and general features of Rhodopseudomonas palustris 42OL, according to MIGS standards [45]

From: Draft genome sequence and overview of the purple non sulfur bacterium Rhodopseudomonas palustris 42OL

MIGS ID

Property

Term

Evidence codea

 

Classification

Domain Bacteria

TAS [46]

  

Phylum Proteobacteria

TAS [47]

  

Class Alphaproteobacteria

TAS [48, 49]

  

Order Rhizobiales

TAS [49, 50]

  

Family Bradyrhizobiaceae

TAS [49, 50]

  

Genus Rhodopseudomonas

TAS [1, 51, 52]

  

Species Rhodopseudomonas palustris

TAS [51, 53, 54]

  

strain: 42OL (CSMA73/42)

 
 

Gram stain

Negative

NAS

 

Cell shape

Rod

IDA

 

Motility

Motile only during first part of cell cycle

NAS

 

Sporulation

Non sporulating

 
 

Temperature range

mesophilic

NAS

 

Optimum temperature

28–30 °C

IDA

 

pH range; Optimum

6.0–8.0; 6.8

TAS [32]

 

Carbon source

VFA, CO2

IDA

MIGS-6

Habitat

Sugar refinery waste pond

IDA

MIGS-6.3

Salinity

Not determined

 

MIGS-22

Oxygen requirement

Facultatively anaerobic

IDA

MIGS-15

Biotic relationship

Free-living

NAS

MIGS-14

Pathogenicity

Non-pathogen

NAS

MIGS-4

Geographic location

Castiglion Fiorentino, AR, Italy

IDA

MIGS-5

Sample collection

1973

IDA

MIGS-4.1

Latitude

43° 19' 30.054"

IDA

MIGS-4.2

Longitude

11° 53' 18.4518"

IDA

MIGS-4.4

Altitude

248 m

IDA

  1. aEvidence codes - IDA inferred from direct assay, TAS traceable author statement (i.e., a direct report exists in the literature), NAS non-traceable author statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [55]