Skip to main content

Table 5 Number and proportion of genes associated with 25 COG functional categories

From: Draft genome sequences of Pantoea agglomerans and Pantoea vagans isolates associated with termites

 

P. agglomerans MP2

P. vagans MP7

 

Code

Value

% of totala

Value

% of totala

Description

J

196

4.50 %

194

4.54 %

Translation

A

1

0.02 %

2

0.05 %

RNA processing and modification

K

358

8.22 %

331

7.74 %

Transcription

L

147

3.38 %

137

3.20 %

Replication, recombination and repair

B

-

-

-

-

Chromatin structure and dynamics

D

42

0.96 %

42

1.00 %

Cell cycle control, Cell division, chromosome partitioning

Y

-

-

-

-

Nuclear structure

V

48

1.10 %

50

1.17 %

Defence mechanisms

T

228

5.24 %

225

5.26 %

Signal transduction mechanisms

M

239

5.49 %

242

5.66 %

Cell wall/membrane biogenesis

N

90

2.07 %

92

2.15 %

Cell motility

Z

-

-

-

-

Cytoskeleton

W

-

-

-

-

Extracellular structures

U

78

1.79 %

82

1.92 %

Intracellular trafficking and secretion

O

137

3.15 %

133

3.11 %

Posttranslational modification, protein turnover, chaperones

C

209

4.80 %

206

4.82 %

Energy production and conversion

G

395

9.07 %

378

8.84 %

Carbohydrate transport and metabolism

E

405

9.30 %

405

9.47 %

Amino acid transport and metabolism

F

96

2.20 %

100

2.34 %

Nucleotide transport and metabolism

H

164

3.77 %

165

3.86 %

Coenzyme transport and metabolism

I

117

2.69 %

106

2.48 %

Lipid transport and metabolism

P

244

5.60 %

248

5.80 %

Inorganic ion transport and metabolism

Q

77

1.77 %

69

1.61 %

Secondary metabolites biosynthesis, transport and catabolism

R

450

10.33 %

430

10.05 %

General function prediction only

S

393

9.02 %

387

9.05 %

Function unknown

-

669

15.36 %

669

15.64 %

Not in COGs

  1. aThe total is based on the total number of predicted protein coding genes in the annotated genomes