Draft genome sequences of Pantoea agglomerans and Pantoea vagans isolates associated with termites

Table 4 Nucleotide content and gene count levels of the genomes

Attribute	Pantoea agglomerans MP2 (total)		Pantoea vagans MP7 (total)
	Value	% of total^a	Value	% of total^a
Genome size (bp)	4,733,829	100 %	4,598,703	100 %
DNA coding (bp)	4,043,819	85.4 %	3,948,783	85.9 %
DNA G + C (bp)	2,614,812	55.2 %	2,541,699	55.3 %
DNA scaffolds	16	-	8	-
Total genes^b	4449	-	4277	-
Protein coding genes	4355	100 %	4181	100 %
RNA genes	94	2.2 %	91	2.2 %
Pseudo genes	-	-	2	0.1 %
Genes in internal clusters	-	-	-	-
Genes with function prediction	3470	79.7 %	3351	80.1 %
Genes assigned to COGs	3686	84.6 %	3608	86.3 %
Genes with Pfam domains	2124	48.8 %	2064	49.4 %
Genes with signal peptides	810	18.6 %	768	18.4 %
Genes with transmembrane helices	927	21.3 %	906	21.7 %
CRISPR repeats	4	0.09 %	3	0.07 %

^aThe percentage of total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome
^bAlso includes pseudogenes and other genes

ISSN: 2524-6372