Table 3 Genome statistics of Shimia str. SK013
Attribute | Value | % of total |
|---|---|---|
Genome size (bp) | 4,049,808 | 100.00 |
DNA coding (bp) | 3,677,855 | 90.82 |
DNA G + C (bp) | 2,317,341 | 57.22 |
DNA scaffolds | 28 | |
Total genes | 4028 | 100.00 |
Protein-coding genes | 3981 | 98.83 |
RNA genes | 47 | 1.17 |
Pseudo genes | 0 | |
Genes in paralog clusters | 3069 | 76.19 |
Genes with function prediction | 3317 | 82.35 |
Genes assigned to COGs | 2860 | 71.00 |
Genes with Pfam domains | 3365 | 83.54 |
Genes with signal peptides | 370 | 9.19 |
Genes with transmembrane helices | 911 | 22.62 |
CRISPR repeats | 0 |