MIGS ID
|
Property
|
Term
|
Evidence codea
|
---|
|
Classification
|
Domain Bacteria
|
TAS [47]
|
| |
Phylum Proteobacteria
|
TAS [48]
|
| |
Class Alphaproteobacteria
|
TAS [49, 50]
|
| |
Order Rhodobacterales
|
TAS [50, 51]
|
| |
Family Rhodobacteraceae
|
TAS [50, 51]
|
| |
Genus Shimia
|
TAS [8]
|
| |
Species Shimia
|
TAS [8]
|
| |
Strain SK013 (IMG2608642164)
|
TAS [7]
|
|
Gram stain
|
negative
|
IDA
|
|
Cell shape
|
Rod shaped
|
IDA
|
|
Motility
|
Motile
|
IDA
|
|
Sporulation
|
none
|
NAS
|
|
Temperature range
|
Mesophile; 10–35 °C
|
IDA
|
|
Optimum temperature
|
25–30 °C
|
IDA
|
|
pH range; Optimum
|
5–9; 7
|
IDA
|
|
Carbon source
|
Sugars, amino acids
|
IDA
|
MIGS-6
|
Habitat
|
Marine
|
IDA
|
MIGS-6.3
|
Salinity
|
0–5 % NaCl (w/v)
|
IDA
|
MIGS-22
|
Oxygen requirement
|
Aerobic
|
IDA
|
MIGS-15
|
Biotic relationship
|
Unknown
|
NAS
|
MIGS-14
|
Pathogenicity
|
non-pathogen
|
NAS
|
MIGS-4
|
Geographic location
|
North Sea/Skagerrak area
|
IDA
|
MIGS-5
|
Sample collection
|
July 24, 2011
|
IDA
|
MIGS-4.1
|
Latitude
|
57°36.77‘N
|
IDA
|
MIGS-4.2
|
Longitude
|
08°35.41‘E
|
IDA
|
MIGS-4.3
|
Depth
|
114 m below sea level
|
IDA
|
MIGS-4.4
|
Altitude
|
Unknown
| |
-
aEvidence codes - IDA Inferred from Direct Assay, TAS Traceable Author Statement (i.e., a direct report exists in the literature), NAS Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [52]