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Table 1 Classification and general features of Shimia str. SK013 in accordance with the MIGS recommendations published by the Genome Standards Consortium [46]

From: Genome sequence of Shimia str. SK013, a representative of the Roseobacter group isolated from marine sediment

MIGS ID

Property

Term

Evidence codea

 

Classification

Domain Bacteria

TAS [47]

  

Phylum Proteobacteria

TAS [48]

  

Class Alphaproteobacteria

TAS [49, 50]

  

Order Rhodobacterales

TAS [50, 51]

  

Family Rhodobacteraceae

TAS [50, 51]

  

Genus Shimia

TAS [8]

  

Species Shimia

TAS [8]

  

Strain SK013 (IMG2608642164)

TAS [7]

 

Gram stain

negative

IDA

 

Cell shape

Rod shaped

IDA

 

Motility

Motile

IDA

 

Sporulation

none

NAS

 

Temperature range

Mesophile; 10–35 °C

IDA

 

Optimum temperature

25–30 °C

IDA

 

pH range; Optimum

5–9; 7

IDA

 

Carbon source

Sugars, amino acids

IDA

MIGS-6

Habitat

Marine

IDA

MIGS-6.3

Salinity

0–5 % NaCl (w/v)

IDA

MIGS-22

Oxygen requirement

Aerobic

IDA

MIGS-15

Biotic relationship

Unknown

NAS

MIGS-14

Pathogenicity

non-pathogen

NAS

MIGS-4

Geographic location

North Sea/Skagerrak area

IDA

MIGS-5

Sample collection

July 24, 2011

IDA

MIGS-4.1

Latitude

57°36.77‘N

IDA

MIGS-4.2

Longitude

08°35.41‘E

IDA

MIGS-4.3

Depth

114 m below sea level

IDA

MIGS-4.4

Altitude

Unknown

 
  1. aEvidence codes - IDA Inferred from Direct Assay, TAS Traceable Author Statement (i.e., a direct report exists in the literature), NAS Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [52]