Table 3 Genome statistics
Attribute | Value | % of Totala |
|---|---|---|
Genome size (bp) | 2,475,669 | 100.00 |
DNA coding (bp) | 2,270,652 | 91.71 |
DNA G + C (bp) | 1,347,012 | 54.41 |
DNA scaffolds | 74 | 100.00 |
Total genesb | 2,882 | 100.00 |
Protein coding genes | 2,834 | 99.33 |
RNA genesc | 48 | 1.66 |
Pseudo genesd | NA | NA |
Genes in internal clusters | 1,294 | 45.65 |
Genes with function prediction | 1,631 | 56.59 |
Genes assigned to COGs | 1,239 | 41.83 |
Genes with Pfam domains | 1,778 | 61.69 |
Genes with signal peptides | 221 | 7.66 |
Genes with transmembrane helices | 633 | 21.96 |
CRISPR repeats | 0 | 0.00 |