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Table 5 Number of genes associated with general COG functional categories

From: Isolation and complete genome sequence of the thermophilic Geobacillus sp. 12AMOR1 from an Arctic deep-sea hydrothermal vent site

Code

Value

%agea

Description

J

146

4,4

Translation, ribosomal structure and biogenesis

A

0

0

RNA processing and modification

K

153

4,6

Transcription

L

313

9,4

Replication, recombination and repair

B

0

0

Chromatin structure and dynamics

D

31

0,93

Cell cycle control, cell division, chromosome partitioning

V

32

0,96

Defense mechanisms

T

92

2,8

Signal transduction mechanisms

M

123

3,7

Cell wall/membrane/envelope biogenesis

N

41

1,2

Cell motility

U

31

0,93

Intracellular trafficking, secretion, and vesicular transport

O

93

2,8

Posttranslational modification, protein turnover, chaperones

C

136

4,1

Energy production and conversion

G

127

3,8

Carbohydrate transport and metabolism

E

230

6,9

Amino acid transport and metabolism

F

65

1,9

Nucleotide transport and metabolism

H

107

3,2

Coenzyme transport and metabolism

I

80

2,4

Lipid transport and metabolism

P

132

3,9

Inorganic ion transport and metabolism

Q

17

0,5

Secondary metabolites biosynthesis, transport and catabolism

R

0

0

General function prediction only

S

1130

34

Function unknown

-

244

7,3

Not in COGs

  1. athe total is based on the number of protein coding genes in the annotated genome