Table 3 Genome statistics
Attribute | Value | % of total |
|---|---|---|
Genome size (bp) | 4,302,226 | 100.00 |
DNA coding (bp) | 3,772,440 | 87.69 |
DNA G + C (bp) | 2,824,842 | 65.66 |
DNA scaffolds | 91 | 100.00 |
Total genes | 3,934 | 100.00 |
Protein coding genes | 3,884 | 98.73 |
RNA genes | 50 | 1.27 |
Pseudo genes | 0 | 0.00 |
Genes in internal clusters | 1,610 | 40.93 |
Genes with function prediction | 3,911 | 99.42 |
Genes assigned to COGs | 1,906 | 48.45 |
Genes with Pfam domains | 2,571 | 65.35 |
Genes with signal peptides | 367 | 9.33 |
Genes with transmembrane helices | 846 | 21.50 |
CRISPR repeats | 6 | - |