Table 3 Genome statistics
Attribute | Strain | |||
|---|---|---|---|---|
CITA 44 | IVIA 2626.1 | |||
Value | % of total | Value | % of total | |
Genome size (bp) | 4,760,482 | 100.00 | 5,027,671 | 100.00 |
DNA coding (bp) | 3,992,937 | 83.88 | 4,295,592 | 84.44 |
DNA G + C (bp) | 3,134,520 | 65.80 | 3,288.794 | 65.40 |
Total genes | 4306 | 100.00 | 4770 | 100.00 |
Protein coding genes | 4250 | 98.62 | 4720 | 98.95 |
RNA genes | 56 | 1.38 | 50 | 1.05 |
Pseudo genes | 0 | 0.00 | 0 | 0.00 |
Genes with function prediction | 3330 | 78.35 | 3265 | 69.17 |
Genes assigned to COGs | 3137 | 73.81 | 3237 | 68.58 |
Genes with Pfam domains | 3337 | 78.51 | 3433 | 72.73 |
Genes with signal peptides | 526 | 12.37 | 545 | 11.55 |
Genes with transmembrane helices | 1121 | 26.37 | 1221 | 25.86 |
CRISPR repeats | 1 | - | 1 | - |