Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031

Guarischi-Sousa, Rodrigo; Puigvert, Marina; Coll, Núria S.; Siri, María Inés; Pianzzola, María Julia; Valls, Marc; Setubal, João C.

doi:10.1186/s40793-016-0131-4

Environmental Microbiome

Table 6 List of T3E genes identified in R. solanacearum UY031 genome and their orthologs

From: Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031

Former effector name	New effector name^a	UY031 (RSUY_)	GM1000 (RS)	Po82 (RSPO_)	IPO1609 (RSIPO_)	UW551 (RRSL_)
AWR2	RipA2	32720	p0099	m00080	03169	03418
AWR3	RipA3	40320	p0846	m01165	03901 + 05027^b	-
AWR4	RipA4	40330/40^b	p0847	m01166^b	03902/3^b	-
AWR5	RipA5_1	41860	p1024	m01289/90^b	04049	01071
AWR5	RipA5_2	19780	-	c01821	01281	00546
Rip2	RipB	30390	c0245	c03161	00263	02573
Rip62	RipC1	42590	p1239	m01371	04123	03371
Rip34	RipD	33840	p0304	m01520	04484	00947
Rip26	RipE1	01190	c3369	c00070	03083	00852
-	RipE2	35100	-	c02513	04353	03923
PopF1	RipF1_1	45370	p1555	m01541	03403	04777
PopF2	RipF2	45510	-	m01557	05028/9^b	04764
Gala2	RipG2	38790	p0672	m01007	04892	02264
Gala3	RipG3	32420	p0028	m00035	03202	00752
Gala4	RipG4	19910	c1800	c01835	01266/68^b	00532
Gala5	RipG5	19920	c1801	c01836	01264	00531
Gala6	RipG6	17940	c1356	c01999	01463	01561
Gala7	RipG7	17950	c1357	c01998	01462	01562
HLK1	RipH1	19380	c1386	c01846	01319	00426
HLK2	RipH2	35470	p0215	m00201/2^c	04317	03559
HLK3	RipH3	33320	p0160	m00157	03105	00041^b
Rip1	RipI	00490 + 32050^b	c0041	c03319	00098^b	02976 + 02040^b
Rip22	RipJ	24610^b	c2132	c02749	-	-
Rip16	RipM	19180	c1475	c01871/2/3	01339 + 05024^b	00705
Rip58	RipN	43290	p1130	m00869	04184	04736
Rip35	RipO1	34050	p0323	m01496	04463	00926
Rip63	RipQ	44390^b	p1277	m00717	04287^b	02855^b
PopS	RipR	42640	p1281	m01376	04127	03375
SKWP1	RipS1	00860	c3401	c00036	00017	04182
SKWP2	RipS2	44630	p1374	m00690	04310	-
SKWP3	RipS3	41210	p0930	m01229	03993/4^b	00237^b
SKWP5	RipS5	10370 + 10840^b	p0296	c02546^b	-	-
SKWP7	RipS7	35110^b	-	m00383	04352^b	03921
Rip59	RipU	43920	p1212	m00805	04243	04660
Rip12	RipV1	17880	c1349	c02006	01470	01554
-	RipV2	19160^b	-	c01875/76^b	01341	00703
PopW	RipW	07010	c2775	c00735	02524	02682
PopA	RipX	40640	p0877	m01196	03933	02443
Rip3	RipY	30260	c0257	c03153	00276	01439
Rip57	RipZ	42040	p1031	m01312	04067	00271^b
AvrA	RipAA	26380^b	c0608	c02748	00659	01581
PopB	RipAB	40630	p0876	m01195	03932	02442
PopC	RipAC	40620	p0875	m01194	03931	02441
Rip72	ripAD	45790	p1601	m01585	03364	02518
Rip4	RipAE	29570	c0321	c03085	00343	01625
Rip41	RipAI	40230	p0838	m01156	03894	01021
Rip21	RipAJ	13300	c2101	c01332	04893	01260
Rip38	RipAL	39210^b	-	m01053	-	02221
Brg40	RipAM	02270	c3272	c00191	02968	02810
Rip43	RipAN	40310	p0845	m01164	03900	01013
Rip50	RipAO	40750	p0879	m01206	03944	03105
Rip60	RipAP	43960	p1215^b	m00800	04247	04655
Rip51	RipAQ	40810	p0885	-	03951	03113
Rip61	RipAR	44220^b	p1236	m00770	04270	01136
Rip39	RipAV	39280	p0732	m01061	-	02213
Brg13	RipAX1	02040	c3290	m01221	02991	-
Rip55	RipAY	41810	p1022	m01283	04046	01066
-	RipBH	45880	-	m01600	03355	00782
-	RipBI	45200^b	-	m00718	03419	00326
-	RipTPS	39290	p0731	m01062^b	-	02212

^aAccording to Peeters et al. [14]; ^b: these genes appear to be nonfunctional due to various reasons (frameshift, truncation, etc.); genes in other columns that appear in the form locus tag x + locus tag y are genes which also appear to be nonfunctional due to frameshifts. ^c:this gene is duplicated

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ISSN: 2524-6372

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