Table 5 Sequence structure and general information of motifs in the whole genome
Motif | Modified position | Type | Motifs detected | # of motifs detected | # of motifs in genome | Mean QV | Mean motif coverage | Partner motif |
|---|---|---|---|---|---|---|---|---|
GATC | 2 | m6A | 78.55Â % | 37,874 | 48,218 | 45.44 | 22.91 | GATC |
GAATTC | 3 | m6A | 74.54Â % | 1938 | 2,600 | 44.25 | 22.53 | GAATTC |
GCTGDAG | 6 | m6A | 73.70Â % | 995 | 1,350 | 43.72 | 22.95 | - |
GGTGGA | 6 | m6A | 70.96Â % | 1935 | 2,727 | 43.22 | 22.81 | - |
GACGNAC | 6 | m6A | 70.26Â % | 723 | 1,029 | 42.58 | 23.11 | - |
ACCACC | 4 | m6A | 69.67Â % | 2410 | 3,459 | 41.91 | 22.82 | - |
CAAGNNNNNNTTTC | 3 | m6A | 69.02Â % | 176 | 255 | 41.45 | 21.48 | - |
GATATC | 2 | m6A | 67.42Â % | 2055 | 3,048 | 42.29 | 23.09 | GATATC |
MCGRAG | 5 | m6A | 52.23Â % | 3390 | 6,491 | 41.64 | 22.35 | - |
GCWGC | 2 | m4C | 24.17Â % | 3911 | 16,184 | 37.52 | 25.13 | GCWGC |
RGATCY | 5 | m4C | 19.09Â % | 808 | 4,232 | 36.99 | 25.80 | RGATCY |
GGCC | 3 | m4C | 18.02Â % | 3721 | 20,654 | 37.67 | 26.39 | GGCC |