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Table 1 Classification and general features of Shinella sp. strain DD12

From: Genome sequence of Shinella sp. strain DD12, isolated from homogenized guts of starved Daphnia magna

MIGS ID Property Term Evidence codea
  Classification Domain Bacteria TAS [47]
   Phylum Proteobacteria TAS [48]
   Class Alphaproteobacteria TAS [49]
   Order Rhizobiales TAS [21, 50]
   Family Rhizobiaceae TAS [21, 51, 52]
   Genus Shinella TAS [20, 53]
   Species Shinella sp. TAS [20]
   Strain: DD12 TAS
  Gram stain negative TAS [20]
  Cell shape Rod IDA
  Motility Motile IDA
  Sporulation Non-sporulating NAS
  Temperature range 15–28 °C IDA
  Optimum temperature 25 °C IDA
  pH range; Optimum 6.6–7.5;7.0 IDA
  Carbon source Glucose, Varied TAS [20]
MIGS-6 Habitat Daphnia magna gut IDA
MIGS-6.3 Salinity 0.5–5 % NaCl IDA
MIGS-22 Oxygen requirement Aerobic TAS [20]
MIGS-15 Biotic relationship free-living/host/commensal IDA
MIGS-14 Pathogenicity non-pathogen NAS
MIGS-4 Geographic location Germany/Constance IDA
MIGS-5 Sample collection November 2008 IDA
MIGS-4.1 Latitude 47.689081 IDA
MIGS-4.2 Longitude 9.187099 IDA
MIGS-4.4 Altitude 405 m; a.s.l. IDA
  1. aEvidence codes - IDA: Inferred from Direct Assay; TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [54]