Table 3 Genome statistics
Attribute | Value | % of total |
|---|---|---|
Genome size (bp) | 1,198,142 | 100.00 |
DNA coding (bp) | 1,084,053 | 90.48 |
DNA G + C (bp) | 633,652 | 52.89 |
DNA scaffolds | 58 | 100.00 |
Total genes | 1,331 | 100.00 |
Protein-coding genes | 1,277 | 95.94 |
RNA genes | 54 | 4.06 |
Pseudo genes | NA | NA |
Genes in internal clusters | 89 | 6.69 |
Genes with function prediction | 970 | 72.88 |
Genes assigned to COGs | 843 | 63.34 |
Genes with Pfam domains | 948 | 71.22 |
Genes with signal peptides | 10 | 0.75 |
Genes with transmembrane helices | 218 | 16.38 |
CRISPR repeats | 5 | - |