Table 4 Genome statistics
Attribute | Value | % of Totala |
|---|---|---|
Genome size (bp) | 5,276,962 | 100.00 |
DNA coding (bp) | 4,614,690 | 87.45 |
DNA G + C (bp) | 2,669,115 | 50.56 |
Total genes | 5,253 | 100.00 |
Protein coding genes | 4,794 | 91.26 |
RNA genes | 108 | 2.06 |
tRNA genes | 86 | 1.64 |
rRNA genes | 22 | 0.42 |
Pseudo genes | 51 | 0.97 |
Genes with function prediction | 3,630 | 69.11 |
Genes assigned to COGs | 3,203 | 60.97 |
Genes with Pfam domains | 4,463 | 84.96 |
Genes with signal peptides | 424 | 8.07 |
Genes with transmembrane helices | 1,124 | 21.40 |
CRISPR repeats | 2 |